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Peptide Analysis


Amino Acid Analysis


Introduction

In many cases an exact knowledge of protein quantities is required for further protein chemistry applications. Amino Acid Analysis is the suitable tool for precise determination of protein quantities, but also provides detailed information regarding the relative amino acid composition and free amino acids. The relative amino acid composition gives a characteristic profil for proteins, which is often sufficient for identification of a protein. It is often used as decision support for choice of proteases for protein fragmentation.

The procedure includes:

  • Hydrolysis
  • Separation, Detection and Quantification


Hydrolysis

Hydrolysis is typically achieved by acid conditions. A standard procedure is hydrolysis with 6 M hydrochloric acid (24 hours, 110°C). These standard procedure is a compromise between time requirement and temperature. Sensitive amino acids (especially tryptophane and cysteine) will be partially destroyed. Gas phase hydrolysis and addition of other acids (e.g. propionic acid, TFA, methansulfonic acid) can be used to shorten the hydrolysis time and improve the yield of sensitive amino acids.

Table 1.
Catalog No.
Product Name
77249
Heptafluorobutyric acid
84429
Hydrochloric acid Solution, 6 M in water
45173
Endoproteinase Arg-C
45168
Endorpoteinase Asp-N
45169
Endoproteinase recombinant
45172
Endoproteinase Glu-C
45175
Endorpoteinase Lys-C
45167
Endoproteinase Pro C
27207
Chymotrypsin



Separation, detection and quantification

Hydrolysed samples(amino acids)are derivatized for sensitive detection,separated by HPLC. Whereas post-column derivatization was typical earlier, pre-column derivatization has gained importance and can be achieved by a broader range of derivatization reagents. The use of internal and external standards is crucial. A selection of well suited products is listed below(see Table 2).

Table 2.
Catalog No.
Product Name
88559
2,2'-Thiodiethanol
12715
Benzo[f]ninhydrin Monohydrate
21795
Carbazole-9-carbonyl chloride
23182
(+)-1-(9-Fluorenyl)ethyl chloroformate solution
23183
(-)-1-(9-Fluorenyl)ethyl chloroformate solution
23184
9-Fluorenylmethyl chloroformate
39065
4-Dimethylaminoazobenzene-4'-isothiocyanate
39068
4-Dimethylaminoazobenzene-4'-sulfonyl chloride
39220
5-(Dimethylamino)-1-naphthalene sulfonylchloride
63707
2-Mercaptoethane sulfonic acid solution
42095
N-a-2,4-Dinitro-5-fluorophenyl)-L-alaninamide
42100
N-a-2,4-Dinitro-5-fluorophenyl)-D-valinamide
42102
N-a-2,4-Dinitro-5-fluorophenyl)-L-valinamide
47614
Fluorescamine
72490
Ninhydrin
78779
Phenyl isothiocyanate
78781
Phenyl isothiocyanate
79760
Phthaldialdehyde
86729
2,3,4,6-Tetra-O-benzoyl-b-D-glucopyranosyl--isothiocyanate
92822
2,3,4,6-Tetra-O-benzoyl-b-D-glucopyranosyl isothiocyanat solution 1 M in water
89485
Titanium(III) chloride solution
87363
Tetrahydrofuran
90337
Triethylamine
33484
1,8-Diazafluoren-9-one
09418
Amino acids Standard Solution, 0.01 mM each
09421
Amino acids Standard Solution, 0.05 mM each
09423
Amino acids Standard Solution, 0.1mM each
09425
Amino acids Standard Solution, 0.5 mM each
09428
Amino acids Standard Solution, 1 mM each
15411
Boc-Cys-OH
58689
N-Isobutyryl-D-cysteine
58698
N-Isobutyryl-L-cysteine

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