Vector Maps

The MISSION research and development team, in collaboration with the RNAi consortium (TRC) scientists, have generated a series of vectors to enable successful implementation of your RNAi experiments. The base vector pLKO.1-puro was developed1 at the Broad Institute as part of TRC. Our contribution to TRC is a diverse set of vectors for critical control experiments, as well as vectors for custom shRNA production. This page contains information pertaining to these vectors.

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TRC1 and TRC1.5 Vector: pLKO.1-puro
TRC1/1.5 Control Vectors
TRC1/1.5 Alternate Vector Backbones
TRC2 Vector: TRC2-pLKO-puro
Lentiviral Packaging Vectors
References

TRC1 and TRC1.5 Vector: pLKO.1-puro Vector and Use

Features of the pLKO.1-puro vector allow for transient or stable transfection of the shRNA as well as production of lentiviral particles.1 Stable gene silencing is selected using the puromycin selectable marker while self-inactivating replication incompetent viral particles can be produced in packaging cells (HEK293T) by co-transfection with compatible packaging plasmids.2,3 TRC1.5 content is currently exclusive to Sigma-Aldrich®. TRC1.5 clones are in the exact same vector backbone as the TRC1 clones. Unlike adenovirus or murine-based MMLV or MSCV retroviral systems, lentiviral-based particles permit efficient infection and integration of the specific shRNA construct into differentiated and non-dividing cells, such as neurons and dendritic cells, overcoming low transfection and integration difficulties when using these cell lines. Compared to siRNA and other vector-based systems, pLKO.1-puro provides solutions for long-term knockdown and phenotypic observation, transduction of difficult or sensitive cell lines (non-dividing cells or primary cells), and is an economical renewable resource.

With an shRNA insert, the length of the pLKO.1-puro plasmid is 7,086 bp, as indicated in the vector map below. Without an shRNA insert, pLKO.1-puro vector has a length of 7,052 bp. The sequence file provided is the empty pLKO.1-puro vector (7,052 bp).

pLKO.1-puro sequence (without shRNA insert, 7052bp) (8 Kb txt file)

TRC1 and TRC1.5 Vector Map (pLKO.1-puro)

TRC1 and TRC1.5 Vector Description and Features

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TRC1/1.5 Control Vectors

Sigma^® offers a variety of controls for conducting the most rigorous and informative shRNA experiments possible. Visit the shRNA controls web page to learn more.

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TRC1/1.5 Alternate Vector Backbones

Sigma offers a variety of alternate vector backbones as part of our standard shRNA offering. With our customizable MISSION shRNA ordering interface, it is possible to order TRC shRNAs in these vector backbones directly online on the clones detail pages for Plasmid DNA or Lentiviral Transduction Particles. For custom hairpins, please visit our custom cloning page for details on ordering.

Sigma also offers several alternate vector backbones with fluorescent proteins or the UbC promoter. These constructs are available only as custom options. Please visit our custom cloning page for details on ordering.

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TRC2 Vector: TRC2-pLKO-puro Vector and Use

The TRC2-pLKO-puro vector also allows for transient or stable transfection of the shRNA as well as production of lentiviral particles. The only change between the TRC1/1.5 vector and the TRC2 vector is the addition of the WPRE (or the Woodchuck Hepatitis Post-Transcriptional Regulatory Element).⁴ This allows for enhanced expression of transgenes delivered by lentivirus.⁵ As with TRC1, stable gene silencing is achieved by using the puromycin selectable marker. Self-inactivating replication incompetent viral particles can be produced in packaging cells (HEK293T) by co-transfection with compatible packaging plasmids. TRC2-pLKO-puro provides solutions for stable long-term knockdown and phenotypic observation, transduction of difficult or sensitive cell lines (non-dividing cells or primary cells), and enhanced expression of transgenes.

With an shRNA insert, the length of the TRC2-pLKO-puro plasmid is 7,518 bp, as indicated in the vector map below. Without an shRNA insert, the TRC2-pLKO-puro vector has a length of 7,484 bp. The sequence file provided is the empty TRC2-pLKO-puro vector (7,484 bp).

TRC2-pLKO-puro sequence (without shRNA insert, 7484bp) (8 Kb text file)

TRC2 Vector Map (TRC2-pLKO-puro)

TRC2 Vector Description and Features

TRC2 Control Vectors

Please note: At this time, there are no alternate vector backbones available for TRC2.

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Lentiviral Packaging Vectors

Finally, for those wanting to package their own lentivirus, we offer the optimized packaging mix. Visit the Lentiviral packaging mix web page to learn more.

References

1. Stewart, S. A. et al. Lentivirus-delivered stable gene silencing by RNAi in primary cells. RNA 2003, 9, 493–501.
2. Zufferey, R. et al. Multiply attenuated lentiviral vector achieves efficient gene delivery in vivo. Nat. Biotechnol 1997, 15, 871–85.
3. Zufferey, R. et al. Self-inactivating lentivirus vector for safe and efficient in vivo gene delivery. J. Virol. 1998, 72, 9873–80.
4. Donello J. E. et al. Woodchuck hepatitis virus contains a tripartite posttranscriptional regulatory element. J. Virol. 1998, 72, 5085-92.
5. Zufferey, R. et al. Woodchuck hepatitis virus posttranscriptional regulatory element enhances expression of transgenes delivered by retroviral vectors. J. Virol. 1999, 73, 2886-92.

Contact Us
For questions about the library, pricing and quotes or other concerns, please e-mail us at: RNAi@sial.com.

MISSION is a registered trademark of Sigma-Aldrich Biotechnology LP and Sigma-Aldrich Co. Label License.

TurboGFP, TagCFP, TagYFP, TagRFP, and TagFP635 are trademarks of Evrogen Co.

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