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A new mathematical model for relative quantification in real-time RT-PCR.

Nucleic acids research (2001-05-09)
M W Pfaffl
ABSTRACT

Use of the real-time polymerase chain reaction (PCR) to amplify cDNA products reverse transcribed from mRNA is on the way to becoming a routine tool in molecular biology to study low abundance gene expression. Real-time PCR is easy to perform, provides the necessary accuracy and produces reliable as well as rapid quantification results. But accurate quantification of nucleic acids requires a reproducible methodology and an adequate mathematical model for data analysis. This study enters into the particular topics of the relative quantification in real-time RT-PCR of a target gene transcript in comparison to a reference gene transcript. Therefore, a new mathematical model is presented. The relative expression ratio is calculated only from the real-time PCR efficiencies and the crossing point deviation of an unknown sample versus a control. This model needs no calibration curve. Control levels were included in the model to standardise each reaction run with respect to RNA integrity, sample loading and inter-PCR variations. High accuracy and reproducibility (<2.5% variation) were reached in LightCycler PCR using the established mathematical model.

MATERIALS
Product Number
Brand
Product Description

Roche
Taq DNA Polymerase, GMP Grade, ≥13000 units/mg protein, >98% (SDS-PAGE), sufficient for ≤2,000 reactions, Difficult Templates/Specialty Enzymes PCR