Custom Oligos

Product Citations and Publications

AQUA™ Peptides

  1. Guenther, J.F., et al., Phosphorylation of soybean nodulin 26 on serine 262 enhances water permeability and is regulated developmentally and by osmotic signals.  Plant Cell, 15(4), 981-991 (2003). Abstract
  2. Brun, V., et al., Isotope-labeled Protein Standards : Toward Absolute Quantitative Proteomics.  Mol. Cell. Proteomics, 6(12), 2139-2149 (2007). Abstract
  3. Li, N., et al., Absolute Difference of Hepatobiliary Transporter Multidrug Resistance-Associated Protein (MRP2/Mrp2) in Liver Tissues and Isolated Hepatocytes from Rat, Dog, Monkey, and Human.  Drug. Metab. Dispos., 37(1), 66-73 (2009). Abstract
  4. Singh, S., et al., FLEXIQuant: A novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides.  J. Proteome Res., 8(5), 2201-2210 (2009). Abstract
  5. Zhou, Y., et al., Calmodulin Mediates the Ca2+-Dependent Regulation of Cx44 Gap Junctions.  Biophys. J., 96(7), 2832-2848 (2009). Abstract
  6. Li, H., et al.,  Proximal glycans outside of the epitopes regulate the presentation of HIV-1 envelope gp120 helper epitopes.  J. Immunol., 182(10), 6369-6378 (2009). Abstract
  7. Le Bihan, T., et al., Quantitative analysis of low-abundance peptides in HeLa cell cytoplasm by targeted liquid chromatography/mass spectrometry and stable isotope dilution: emphasising the distinction between peptide detection and peptide identification.  Rapid Commun. Mass Spectrom., 24(7), 1093-1104 (2010). Abstract
  8. Rosario, M., et al., Novel Recombinant Mycobacterium bovis BCG, Ovine Atadenovirus, and Modified Vaccinia Virus Ankara Vaccines Combine To Induce Robust Human Immunodeficiency Virus-Specific CD4 and CD8 T-Cell Responses in Rhesus Macaques.  J. Virol., 84(12), 5898-5908 (2010). Abstract
  9. Kettenbach, A.N., et al., Absolute quantification of protein and post-translational modification abundance with stable isotope–labeled synthetic peptides.  Nat. Protoc., 6(2), 175-186 (2011). Abstract
  10. Santhoskumar, P., et al., αA-Crystallin Peptide 66SDRDKFVIFLDVKHF80 Accumulating in Aging Lens Impairs the Function of α-Crystallin and Induces Lens Protein Aggregation.  PLoS One, 6(4), e19291 (2011). Abstract
  11. Kroot, J.J.C., et al., Second Round Robin for plasma hepcidin methods: First steps toward harmonization.  Am. J. Hematol., 87(10), 977-983 (2012). Abstract
  12. Coppinger, J.A., et al. A Chaperone Trap Contributes to the Onset of Cystic Fibrosis.  PLoS One, 7(5), e37682 (2012). Abstract
  13. Sato, Y., et al., Simultaneous Absolute Protein Quantification of Carboxylesterases 1 and 2 in Human Liver Tissue Fractions using Liquid Chromatography-Tandem Mass Spectrometry.  Drug Metab Dispos., 40(7), 1389-1396 (2012). Abstract
  14. Wu, S., et al., CAND1 controls in vivo dynamics of the cullin 1-RING ubiquitin ligase repertoire.  Nat. Commun., 4, 1642-1650 (2013). Abstract
  15. Anderson DS, Heeney MM, Roth U, Menzel C, Fleming MD, & Steen H (2010). High-throughput matrix-assisted laser desorption ionization-time-of-flight mass spectrometry method for quantification of hepcidin in human urine. Anal Chem, 82, 1551-1555. AQUA peptide used as internal standard in quantitative hepcidin assay.
  16. Prabakaran S, Everley RA, Landrieu I, Wieruszeski JM, Lippens G, Steen H, & Gunawardena J (2011). Comparative analysis of Erk phosphorylation suggests a mixed strategy for measuring phospho-form distributions. Mol Syst Biol, 7, 482. AQUA peptide used as LC/MS assay standard.
  17. Schmidt C, Lenz C, Grote M, Luhrmann R, & Urlaub H (2010). Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring. Anal Chem, 82, 2784-2796. AQUA peptides used to analyze a protein mix.
  18. Whiteaker JR, Zhao L, Anderson L, & Paulovich AG (2010). An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers. Mol Cell Proteomics, 9, 184-196. AQUA peptides used in protein quantification.

PEPscreen®: Custom Peptide Libraries

  1. Pasupuleti, M., et al., Preservation of antimicrobial properties of complement peptide C3a, from invertebrates to humans.  J. Biol. Chem., 282(4), 2520-2528 (2007). Abstract
  2. Kemp, B.P., et al., S cysteine-rich (SCR) binding domain analysis of the Brassica self-incompatibility S-locus receptor kinase.  New Phytol., 175(4), 619-629 (2007). Abstract
  3. Huleatt, J.W., et al., Potent immunogenicity and efficacy of a universal influenza vaccine candidate comprising a recombinant fusion protein linking influenza M2e to the TLR5 ligand flagellin. Vaccine, 26(2), 201-204 (2008). Abstract
  4. Schmidtchen, A., et al., Boosting Antimicrobial Peptides by Hydrophobic Oligopeptide End Tags.  J. Biol. Chem., 284(26), 17584-17594 (2009). Abstract
  5. Hueber, W., et al., Blood autoantibody and cytokine profiles predict response to anti-tumor necrosis factor therapy in rheumatoid arthritis.  Arthritis Res. Ther., 11(3), R76 (2009). Abstract
  6. Singh, K.K., et al., Peptides of a novel Mycobacterium tuberculosis-specific cell wall protein for immunodiagnosis of tuberculosis.  J. Infect. Dis., 200(4), 571581 (2009). Abstract
  7. Lepone, L., et al., Monofunctional and Polyfunctional CD8+ T Cell Responses to Human Herpesvirus 8 Lytic and Latency Proteins.  Clin. Vaccine Immunol., 17(10), 1507-1516 (2010). Abstract
  8. Kasetty, G., et al., Structure-Activity Studies and Therapeutic Potential of Host Defense Peptides of Human Thrombin.  Antimicrob. Agents Chemother., 55(6), 2880-2890 (2011). Abstract
  9. Aly, L., et al., Central role of JC virus-specific CD4+ lymphocytes in progressive multi-focal leucoencephalopathy-immune reconstitution inflammatory syndrome.  Brain, 134(Pt 9), 2687-2702 (2011). Abstract
  10. Nakayama, E., et al., Antibody-Dependent Enhancement of Marburg Virus Infection.  J. Infect. Dis., 204(suppl 3), S978-S985 (2011). Abstract
  11. Shen, G., et al., LipC (Rv0220) Is an Immunogenic Cell Surface Esterase of Mycobacterium tuberculosisInfect. Immun., 80(1), 243-253 (2012). Abstract
  12. Chow, I.T., et al., DRB1*12:01 presents a unique subset of epitopes by preferring aromatics in pocket 9. Mol. Immunol., 50(1-2), 26-34 (2012). Abstract
  13. Dubois, M.E., et al., Optimization of peptide-based ELISA for serological diagnostics: a retrospective study of human monkeypox infection.  Vector Borne Zoonotic Dis., 12(5), 400-409 (2012). Abstract
  14. George, B., et al., Crk1/2-dependent signaling is necessary for podocyte foot process spreading in mouse models of glomerular disease.  J. Clin. Invest., 122(2), 674-692 (2012). Abstract
  15. Arikata, M., et al., Memory immune responses against pandemic (H1N1) 2009 influenza virus induced by a whole particle vaccine in cynomolgus monkeys carrying Mafa-A1*052:02.  PLoS One, 7(5), e37220 (2012). Abstract
  16. Ahsan, N., et al., "Scanning mutagenesis" of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex. Front. Plant Sci., 3, 153 (2012). Abstract
  17. Xu, C., et al., Autoreactive T cells in human smokers is predictive of clinical outcome.  Front. Immunol., 3, 267 (2012). Abstract
  18. Schmelz, E.A., et al., An Amino Acid Substitution Inhibits Specialist Herbivore Production of an Antagonist Effector and Recovers Insect-Induced Plant Defenses.  Plant Physiol., 160(3), 1468-1478 (2012). Abstract
  19. Zhao, Y., et al., High levels of virus-specific CD4+ T cells predict severe pandemic influenza A virus infection.  Am. J. Respir. Crit. Care. Med., 186(12), 1292-1297 (2012). Abstract
  20. Zhang, Y.H., et al., Interferon-induced transmembrane protein-3 genetic variant rs12252-C is associated with severe influenza in Chinese individuals.  Nat. Commun., 4, 1418-1423 (2013). Abstract
  21. Zhao, Y., et al., Quantitation of the dynamic profiles of the innate immune response using multiplex selected reaction monitoring-mass spectrometry.  Mol. Cell Proteomics, 12(6), 1513-1529 (2013). Abstract
  22. Huffaker, A., et al., Plant elicitor peptides are conserved signals regulating direct and indirect antiherbivore defense.  Proc. Nat. Acad. Sci. USA, 110(14), 5707-5712 (2013). Abstract
  23. Banas, M., et al., Chemerin Is an Antimicrobial Agent in Human Epidermis.  PLoS One, 8(3), e58709 (2013). Abstract
  24. Su, S.H., et al., Deletion of a tandem gene family in Arabidopsis: increased MEKK2 abundance triggers autoimmunity when the MEKK1-MKK1/2-MPK4 signaling cascade is disrupted.  Plant Cell, 25(5), 1895-1910 (2013). Abstract
  25. Falta, M.T., et al., Identification of beryllium-dependent peptides recognized by CD4+ T cells in chronic beryllium disease.  J. Exp. Med., 210(7), 1403-1418 (2013). Abstract
  26. Strandberg, L.S., et al., Congenital Heart Block Maternal Sera Autoantibodies Target an Extracellular Epitope on the α1G T-Type Calcium Channel in Human Fetal Hearts. PLoS One, 8(9), e72668 (2013). Abstract
  27. Westman, J., et al., p33 (gC1q receptor) prevents cell damage by blocking the cytolytic activity of antimicrobial peptides.  J. Immunol., 191(11), 5714-5721 (2013). Abstract
  28. Huang, Y., and Thelen, J.J., “KiC Assay: A Quantitative Mass Spectrometry-Based Approach”, from Quantitative Methods in Proteomics: Methods in Molecular Biology (Katrin Marcus, ed.).  Volume 893, pp. 359-370 (ISBN 978-1-61779-884-9). Humana Press (2012).
  29. Huang Y, Houston NL, Tovar-Mendez A, Stevenson SE, Miernyk JA, Randall DD, & Thelen JJ (2010). A quantitative mass spectrometry-based approach for identifying protein kinase clients and quantifying kinase activity. Anal Biochem, 402, 69-76. PEPscreen® peptides used in the development of a new protein kinase assay.

SPOTs: Custom Peptide Arrays

  1. Frank, R., and Dübel, S., Analysis of Protein Interactions with Immobilized Peptide Arrays Synthesized on Membrane Supports.  CSH Protoc., 2006(4) (2006). Abstract
  2. Kawaguchi M, Hager HA, Wada A, Koyama T, Chang MS, & Bader DM (2008). Identification of a novel intracellular interaction domain essential for Bves function. PLoS One, 3, e2261. Custom SPOTS membrane used in study of blood vessel epicardial substance.

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