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  • High-throughput chemical modification of oligonucleotides for systematic structure-activity relationship evaluation.

High-throughput chemical modification of oligonucleotides for systematic structure-activity relationship evaluation.

Bioconjugate chemistry (2014-11-15)
Daniel Zewge, Francis Gosselin, Denise M Kenski, Jenny Li, Vasant Jadhav, Yu Yuan, Sandhya S Nerurkar, David M Tellers, W Michael Flanagan, Ian W Davies
ABSTRACT

Chemical modification of siRNA is achieved in a high-throughput manner (96-well plate format) by copper catalyzed azide-alkyne cycloadditions. This transformation can be performed in one synthetic operation at up to four positions with complete specificity, good yield, and acceptable purity. As demonstrated here, this approach extends the current synthetic options for oligonucleotide modifications and simultaneously facilitates the systematic, rapid biological evaluation of modified siRNA.

MATERIALS
Product Number
Brand
Product Description

Supelco
Methanol, analytical standard
Sigma-Aldrich
Imidazole, puriss. p.a., ≥99.5% (GC)
Sigma-Aldrich
Triethylamine, ≥99.5%
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Triethylamine, puriss. p.a., ≥99.5% (GC)
Sigma-Aldrich
Triethylamine, BioUltra, ≥99.5% (GC)
Sigma-Aldrich
Imidazole, ReagentPlus®, 99%
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Methanol, anhydrous, 99.8%
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Trichloroacetic acid, suitable for electrophoresis, suitable for fixing solution (for IEF and PAGE gels), ≥99%
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Water, Nuclease-Free Water, for Molecular Biology
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Trichloroacetic acid, ACS reagent, ≥99.0%
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Imidazole, Molecular Biology, ≥99% (titration)
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Triethylamine, ≥99%
Sigma-Aldrich
Imidazole, ACS reagent, ≥99% (titration)
Supelco
Water, suitable for ion chromatography
Sigma-Aldrich
Triethylamine, ≥99.5%
Sigma-Aldrich
Acetonitrile solution, contains 0.1 % (v/v) trifluoroacetic acid, suitable for HPLC
Supelco
Methanol, Pharmaceutical Secondary Standard; Certified Reference Material
Supelco
Residual Solvent - Acetonitrile(solution in DMSO), Pharmaceutical Secondary Standard; Certified Reference Material
Imidazole, European Pharmacopoeia (EP) Reference Standard
Sigma-Aldrich
Methanol, suitable for NMR (reference standard)
Supelco
Water, ACS reagent, for ultratrace analysis
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Methanol, Absolute - Acetone free
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Water, suitable for HPLC
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Methanol, BioReagent, ≥99.93%
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Methanol, ACS spectrophotometric grade, ≥99.9%
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Methanol, ACS reagent, ≥99.8%
Sigma-Aldrich
Methanol, puriss., meets analytical specification of Ph Eur, ≥99.7% (GC)
Sigma-Aldrich
Water, Deionized
Supelco
Imidazole, Pharmaceutical Secondary Standard; Certified Reference Material
USP
Imidazole, United States Pharmacopeia (USP) Reference Standard