The R&D team has indicated that for the user protocol (Appendix A: Optimization of DNA Sonication), both the light and heavy versions of Phase Lock Gel have been tested to work well. However, if one were to use the phase lock tube for RNA purification steps not described in the user protocol, then the heavy variant would be preferred.
17-10521
EZ-Magna NuCLEAR™ RIP (Cross-Linked) Nuclear RNA-Binding Protein Immunoprecipitation Kit
EZ-Magna Nuclear RIP (Cross-Linked) RNA-Binding Protein Immunoprecipitation Kit is designed for the analysis of chromatin associated RNA such lncRNAs, enhancer RNAs and miRNAs.
Sinonimo/i:
Magnetic RNA-BP Immunoprecipitation, RNA-Binding Protein Immunoprecipitation
Autenticati per visualizzare i prezzi riservati alla tua organizzazione & contrattuali
Scegli un formato
24 ASSAYS
940,00 €
940,00 €
Per informazioni sulla disponibilità, contatta il Servizio Clienti.
Informazioni su questo articolo
Codice UNSPSC:
12161503
eCl@ss:
32161000
NACRES:
NA.32
Vai a
Servizio Tecnico
Hai bisogno di aiuto? Il nostro team di scienziati qualificati è a tua disposizione.
Permettici di aiutartiLivello qualitativo
Produttore/marchio commerciale
Magna Nuclear RIP
tecniche
RIP: suitable
activity assay: suitable (protein interaction)
immunoprecipitation (IP): suitable
Condizioni di spedizione
dry ice
Categorie correlate
1 of 4
Questo articolo | 17-10523 | 17-10520 | 17-10522 |
|---|---|---|---|
| technique(s) RIP: suitable, immunoprecipitation (IP): suitable, activity assay: suitable (protein interaction) | technique(s) - | technique(s) - | technique(s) - |
| manufacturer/tradename Magna Nuclear RIP | manufacturer/tradename - | manufacturer/tradename - | manufacturer/tradename - |
| Quality Level 100 | Quality Level 100 | Quality Level 100 | Quality Level 100 |
| shipped in dry ice | shipped in - | shipped in - | shipped in - |
Descrizione generale
Features and Advantages
Magna Nuclear RIP Kits are specially designed to allow the discovery and analysis of a variety of chromatin associated RNAs such as long non-coding RNAs, enhancer RNAs and miRNAs . These chromatin-associated RNAs often regulate gene expression and can be analyzed with applications including quantitative reverse transcription polymerase chain reaction (RT-PCR), microarray analysis (RIP-chip) and next generation sequencing (RIP-Seq).
Nuclear RIP can be performed using chromatin that has interactions stabilized by formaldehyde treatment (cross-linked) or chromatin that has not been treated with a cross linking reagent (native). While both of these approaches are similar in that they are designed to recover chromatin associated RNA, the reagents used and the details of the protocol and types of interactions typically detected are different. Cross-linked can capture higher molecular weight complexes in in vivo configurations with possibly lower affinities. In contrast native RIP is expected to recover high affinity, more direct interactions between proteins encoded RNA binding motifs and candidate RNAs. For less well understood proteins and protein complexes often both approaches are used.
The kit described here is for the cross-linked approach. If a native approach is of interest please visit the product page for the Magna Nuclear RIP (Native) Kit, catalogue # 17-10522 or the EZ-Magna Nuclear RIP (Native) Kit, catalogue # 17-10523.
- Generates cross-linked chromatin to allow analysis of a variety of chromatin-associated RNAs
- Flexible, scalable input requirements: Recover RNA from millions of cells or as few as 5,000 cells
- Magnetic protein A/G bead blend and optimized buffer system results in low backgrounds and high signal-to-noise ratios
- Suitable for analysis by RT-qPCR or RIP-seq
- Complete set of reagents and detailed protocol to enable first-time success
Magna Nuclear RIP Kits are specially designed to allow the discovery and analysis of a variety of chromatin associated RNAs such as long non-coding RNAs, enhancer RNAs and miRNAs . These chromatin-associated RNAs often regulate gene expression and can be analyzed with applications including quantitative reverse transcription polymerase chain reaction (RT-PCR), microarray analysis (RIP-chip) and next generation sequencing (RIP-Seq).
Nuclear RIP can be performed using chromatin that has interactions stabilized by formaldehyde treatment (cross-linked) or chromatin that has not been treated with a cross linking reagent (native). While both of these approaches are similar in that they are designed to recover chromatin associated RNA, the reagents used and the details of the protocol and types of interactions typically detected are different. Cross-linked can capture higher molecular weight complexes in in vivo configurations with possibly lower affinities. In contrast native RIP is expected to recover high affinity, more direct interactions between proteins encoded RNA binding motifs and candidate RNAs. For less well understood proteins and protein complexes often both approaches are used.
The kit described here is for the cross-linked approach. If a native approach is of interest please visit the product page for the Magna Nuclear RIP (Native) Kit, catalogue # 17-10522 or the EZ-Magna Nuclear RIP (Native) Kit, catalogue # 17-10523.
Confezionamento
Kit capacity: 24 RNA-binding protein immunoprecipitation assays using a cross-linked nuclear lysate
Stato fisico
Two boxes containing key reagents for generation of cross linked nuclear lysates and performance of 24 individual RNA-binding protein immunoprecipitation (RIP) reactions. Plus box containing positive and negative control antibodies and qPCR primers.
Nota sulla preparazione
Upon receipt, store components at the temperatures indicated on the labels.
Kit components are stable for 6 months from date of shipment when stored as directed.
Kit components are stable for 6 months from date of shipment when stored as directed.
Altre note
10X Glycine
10X PBS
Nuclei Isolation Buffer
RIP Cross-Linked Lysis Buffer
Protein A/G Magnetic Beads
Nuclear RIP Dilution Buffer
Low Salt Wash Buffer
High Salt Wash Buffer
LiCl Wash Buffer
TE Buffer
RIP Elution Buffer
10% SDS
0.5 M EDTA
DNase I (RNase Free)
DNase I Supplement
DNase I Reaction Buffer
Protease Inhibitor Cocktail III, Animal Free
RNAse Inhibitor
Proteinase K
Control Antibodies and Primers
Normal Mouse IgG Negative Control Antibody
Anti-EZH2 Positive Control Antibody
NEAT1 Positive Control Primers
U1 snRNA Negative Control Primers
10X PBS
Nuclei Isolation Buffer
RIP Cross-Linked Lysis Buffer
Protein A/G Magnetic Beads
Nuclear RIP Dilution Buffer
Low Salt Wash Buffer
High Salt Wash Buffer
LiCl Wash Buffer
TE Buffer
RIP Elution Buffer
10% SDS
0.5 M EDTA
DNase I (RNase Free)
DNase I Supplement
DNase I Reaction Buffer
Protease Inhibitor Cocktail III, Animal Free
RNAse Inhibitor
Proteinase K
Control Antibodies and Primers
Normal Mouse IgG Negative Control Antibody
Anti-EZH2 Positive Control Antibody
NEAT1 Positive Control Primers
U1 snRNA Negative Control Primers
Note legali
NuCLEAR is a trademark of Sigma-Aldrich Co. LLC
Avvertenze
Danger
Indicazioni di pericolo
Consigli di prudenza
Classi di pericolo
Aquatic Acute 1 - Aquatic Chronic 2 - Eye Dam. 1 - Skin Irrit. 2
Codice della classe di stoccaggio
10-13 - German Storage Class 10 to 13
Classe di pericolosità dell'acqua (WGK)
WGK 3
Certificati d'analisi (COA)
Cerca il Certificati d'analisi (COA) digitando il numero di lotto/batch corrispondente. I numeri di lotto o di batch sono stampati sull'etichetta dei prodotti dopo la parola ‘Lotto’ o ‘Batch’.
Possiedi già questo prodotto?
I documenti relativi ai prodotti acquistati recentemente sono disponibili nell’Archivio dei documenti.
Mengsi Hu et al.
Journal of cellular and molecular medicine, 21(11), 2732-2747 (2017-04-27)
Metastasis associated lung adenocarcinoma transcript 1(MALAT1) is a long non-coding RNA, broadly expressed in mammalian tissues including kidney and up-regulated in a variety of cancer cells. To date, its functions in podocytes are largely unknown. β-catenin is a key mediator
Michele Spiniello et al.
RNA (New York, N.Y.), 25(10), 1337-1352 (2019-07-13)
Proteins bind mRNA through their entire life cycle from transcription to degradation. We analyzed c-Myc mRNA protein interactors in vivo using the HyPR-MS method to capture the crosslinked mRNA by hybridization and then analyzed the bound proteins using mass spectrometry
Xiaoli Zhang et al.
iScience, 24(10), 103097-103097 (2021-10-09)
The serine/arginine-rich (SR) family of splicing factors plays important roles in mRNA splicing activation, repression, export, stabilization, and translation. SR-splicing factor 5 (SRSF5) is a glucose-inducible protein that promotes tumor cell growth. However, the functional role of SRSF5 in tissue
Jingyi Song et al.
Molecules (Basel, Switzerland), 23(12) (2018-12-14)
Glioblastoma (GBM), the most common type of primary tumor in the central nervous system, is a very aggressive brain tumor with poor prognosis and a high recurrence rate. Increasing evidence suggests that human cytomegalovirus (HCMV) infection is related to GBM
Michele Spiniello et al.
Journal of proteome research, 17(9), 3022-3038 (2018-07-05)
RNA-protein interactions are integral to the regulation of gene expression. RNAs have diverse functions and the protein interactomes of individual RNAs vary temporally, spatially, and with physiological context. These factors make the global acquisition of individual RNA-protein interactomes an essential
Contenuto correlato
"Gene regulation plays a critical role in complex cellular processes such as development, differentiation, and cellular response to environmental changes. While the regulation of gene expression by transcription factors and epigenetic influences has been well studied over time, pervasive genomic transcription and the role of non-coding RNAs in this process is a rapidly evolving field that remains to be thoroughly explored. Chromatin is typically thought of as a complex of DNA, histones, and non-histone proteins, and RNA. Historically, mRNA was considered to be the only RNA associated with chromatin. These mRNAs would transiently associate with chromatin during transcription then exit the nucleus for translation. However, mounting evidence suggests that various classes of non-coding RNAs (e.g. long non-coding RNAs (lncRNA) small nuclear RNAs (snRNA), enhancer RNAs (eRNA) etc.) are associated with chromatin and likely serve regulatory functions1-3. For the past several years chromatin immunoprecipitation (ChIP) has been used to interrogate association of proteins with genomic DNA sequences. The need to better understand the RNA component of chromatin has driven the development of additional methods to allow analysis and characterization of chromatin associated RNA. One approach used to detect and identify RNA molecules that interact with a specific protein is RNAbinding protein immunoprecipitation (RIP)4. This method allows the immunoprecipitation of protein:RNA complexes that are both nuclear and cytoplasmic using whole cell lysates generated using kit such as the Magna RIP™ RNA Binding Protein Immunoprecipitation Kit."
Cancer is a complex disease manifestation. At its core, it remains a disease of abnormal cellular proliferation and inappropriate gene expression. In the early days, carcinogenesis was viewed simply as resulting from a collection of genetic mutations that altered the gene expression of key oncogenic genes or tumor suppressor genes leading to uncontrolled growth and disease (Virani, S et al 2012). Today, however, research is showing that carcinogenesis results from the successive accumulation of heritable genetic and epigenetic changes. Moreover, the success in how we predict, treat and overcome cancer will likely involve not only understanding the consequences of direct genetic changes that can cause cancer, but also how the epigenetic and environmental changes cause cancer (Johnson C et al 2015; Waldmann T et al 2013). Epigenetics is the study of heritable gene expression as it relates to changes in DNA structure that are not tied to changes in DNA sequence but, instead, are tied to how the nucleic acid material is read or processed via the myriad of protein-protein, protein-nucleic acid, and nucleic acid-nucleic acid interactions that ultimately manifest themselves into a specific expression phenotype (Ngai SC et al 2012, Johnson C et al 2015). This review will discuss some of the principal aspects of epigenetic research and how they relate to our current understanding of carcinogenesis. Because epigenetics affects phenotype and changes in epigenetics are thought to be key to environmental adaptability and thus may in fact be reversed or manipulated, understanding the integration of experimental and epidemiologic science surrounding cancer and its many manifestations should lead to more effective cancer prognostics as well as treatments (Virani S et al 2012).
-
What is the gel phase lock tube referred to in the 17-10521 User guide, specifically in the Appendix section XXI on page 24?
1 risposta-
Utile?
-
Filtri attivi
Il team dei nostri ricercatori vanta grande esperienza in tutte le aree della ricerca quali Life Science, scienza dei materiali, sintesi chimica, cromatografia, discipline analitiche, ecc..
Contatta l'Assistenza Tecnica